Edholm, Olle: search on Z-Library

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1

A fast and simple method to calculate protonation states in proteins

Lars Sandberg, Olle Edholm

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1999

Language:

english

File:

PDF, 144 KB

english, 1999

2

Stretched exponentials and barrier distributions

Olle Edholm, Clas Blomberg

Journal:

Chemical Physics

Year:

2000

Language:

english

File:

PDF, 118 KB

english, 2000

3

The shape and free energy of a lipid bilayer surrounding a membrane inclusion

Tjörnhammar, Richard, Edholm, Olle

Journal:

Chemistry and Physics of Lipids

Year:

2013

Language:

english

File:

PDF, 840 KB

english, 2013

4

Biomolecular dynamics: A report from a workshop in Gysinge, Sweden, October 4–7, 1982

Edholm, Olle, Nilsson, Lennart, Berg, Otto, Ehrenberg, Måns, Claesens, Flora, Gräslund, Astrid, Jönsson, Bo, Teleman, Olle

Journal:

Quarterly Reviews of Biophysics

Year:

1984

Language:

english

File:

PDF, 1.39 MB

english, 1984

5

Spatial and energetic-entropic decomposition of surface tension in lipid bilayers from molecular dynamics simulations

Lindahl, Erik, Edholm, Olle

Journal:

The Journal of Chemical Physics

Year:

2000

Language:

english

File:

PDF, 786 KB

english, 2000

6

Molecular dynamics simulation of NMR relaxation rates and slow dynamics in lipid bilayers

Lindahl, Erik, Edholm, Olle

Journal:

The Journal of Chemical Physics

Year:

2001

Language:

english

File:

PDF, 595 KB

english, 2001

7

Quantum Mechanical to Classical Thermodynamic Integration of Zinc Binding in Proteins

Tjörnhammar, Richard O., Edholm, Olle

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 39 KB

english, 2011

8

Investigation of the Proton Release Channel of Bacteriorhodopsin in Different Intermediates of the Photo Cycle. A Molecular Dynamics Study

Nagel, Jochen, Edholm, Olle, Berger, Oliver, Jähnig, Fritz

Journal:

Year:

1997

Language:

english

File:

PDF, 435 KB

english, 1997

9

Order parameters in hydrocarbon chains

Journal:

Chemical Physics

Year:

1982

Language:

english

File:

PDF, 987 KB

english, 1982

10

Molecular dynamics study of the binding of phenylalanine stereoisomers to thermolysin

Indira Ghosh, Olle Edholm

Journal:

Biophysical Chemistry

Year:

1994

Language:

english

File:

PDF, 4.36 MB

english, 1994

11

Structure and Dynamics of Interfacial Water in an Lα Phase Lipid Bilayer from Molecular Dynamics Simulations

Åman, Ken, Lindahl, Erik, Edholm, Olle, Håkansson, Pär, Westlund, Per-Olof

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 630 KB

english, 2003

12

Quantum Corrections to Classical Molecular Dynamics Simulations of Water and Ice

Waheed, Qaiser, Edholm, Olle

Journal:

Journal of Chemical Theory and Computation

Year:

2011

Language:

english

File:

PDF, 1.25 MB

english, 2011

13

Dynamic Structure Factors From Lipid Membrane Molecular Dynamics Simulations

Brandt, Erik G., Edholm, Olle

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 36 KB

english, 2009

14

Cholesterol/Phospholipid Bilayer Phase Diagrams from Coarse Grained Simulations

Edholm, Olle, Tjörnhammar, Richard, Waheed, Qaiser

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 39 KB

english, 2013

15

Molecular dynamics simulation of a binary mixture near the lower critical point

Pousaneh, Faezeh, Edholm, Olle, Maciołek, Anna

Journal:

The Journal of Chemical Physics

Year:

2016

Language:

english

File:

PDF, 5.47 MB

english, 2016

16

pKa calculations along a bacteriorhodopsin molecular dynamics trajectory

Lars Sandberg, Olle Edholm

Journal:

Biophysical Chemistry

Year:

1997

Language:

english

File:

PDF, 1.52 MB

english, 1997

17

Mesoscopic Undulations and Thickness Fluctuations in Lipid Bilayers from Molecular Dynamics Simulations

Lindahl, Erik, Edholm, Olle

Journal:

Biophysical Journal

Year:

2000

Language:

english

File:

PDF, 729 KB

english, 2000

18

Calculated Solvation Free Energies of Amino Acids in a Dipolar Approximation

Sandberg, Lars, Edholm, Olle

Journal:

Journal of Physical Chemistry B

Year:

2001

Language:

english

File:

PDF, 95 KB

english, 2001

19

Phase Transitions in Coarse-Grained Lipid Bilayers Containing Cholesterol by Molecular Dynamics Simulations

Waheed, Qaiser, Tjörnhammar, Richard, Edholm, Olle

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 927 KB

english, 2012

20

Modeling of the structure of bacteriorhodopsin: A molecular dynamics study

Fritz Jähnig, Olle Edholm

Journal:

Journal of Molecular Biology

Year:

1992

Language:

english

File:

PDF, 1.54 MB

english, 1992

21

Structure and Fluctuations of Bacteriorhodopsin in the Purple Membrane: A Molecular Dynamics Study

Olle Edholm, Oliver Berger, Fritz Jähnig

Journal:

Journal of Molecular Biology

Year:

1995

Language:

english

File:

PDF, 1.70 MB

english, 1995

22

Molecular dynamics simulations of a sodium octanoate micelle in aqueous solution

Jönsson, Bo, Edholm, Olle, Teleman, Olle

Journal:

The Journal of Chemical Physics

Year:

1986

Language:

english

File:

PDF, 1.26 MB

english, 1986

23

Structural Correlations and Thermodynamics of the Gel Phase in Lipid Bilayers

Tjörnhammar, Richard O., Edholm, Olle

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 74 KB

english, 2012

24

Studies of Phase Transition(s) in Phospholipid/Cholesterol Systems by Molecular Dynamics Simulations

Waheed, Qaiser, Edholm, Olle

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 36 KB

english, 2011

25

The structure of a membrane-spanning polypeptide studied by molecular dynamics

Olle Edholm, Fritz Jähnig

Journal:

Biophysical Chemistry

Year:

1988

Language:

english

File:

PDF, 1.07 MB

english, 1988

26

Can the structure of proteins be calculated?

Fritz Jähnig, Olle Edholm

Journal:

Zeitschrift für Physik B Condensed Matter

Year:

1990

Language:

english

File:

PDF, 620 KB

english, 1990

27

Areas of Molecules in Membranes Consisting of Mixtures

Edholm, Olle, Nagle, John F.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 110 KB

english, 2005

28

10.3168/jds.S0022-0302(84)81329-6

Waheed, Qaiser, Edholm, Olle

Journal:

Journal of Dairy Science

Year:

1984

Language:

english

File:

PDF, 96 KB

english, 1984

29

[Current Topics in Membranes] Computational Modeling of Membrane Bilayers Volume 60 || Chapter 3 Time and Length Scales in Lipid Bilayer Simulations

Year:

2008

Language:

english

File:

PDF, 176 KB

english, 2008

30

Effect of Force Field Parameters on Sodium and Potassium Ion Binding to Dipalmitoyl Phosphatidylcholine Bilayers

Cordomí, Arnau, Edholm, Olle, Perez, Juan J.

Journal:

Journal of Chemical Theory and Computation

Year:

2009

Language:

english

File:

PDF, 3.18 MB

english, 2009

31

Effect of Ions on a Dipalmitoyl Phosphatidylcholine Bilayer. A Molecular Dynamics Simulation Study

Cordomí, Arnau, Edholm, Olle, Perez, Juan J.

Journal:

Journal of Physical Chemistry B

Year:

2008

Language:

english

File:

PDF, 326 KB

english, 2008

32

Free energy determination of polypeptide conformations generated by molecular dynamics

Di Nola, Alfredo, Berendsen, Herman J. C., Edholm, Olle

Journal:

Year:

1984

Language:

english

File:

PDF, 838 KB

english, 1984

33

Dispersion Corrections to the Surface Tension at Planar Surfaces

Lundberg, Linnea, Edholm, Olle

Journal:

Journal of Chemical Theory and Computation

Year:

2016

Language:

english

File:

PDF, 1022 KB

english, 2016

34

A comparison between two prokaryotic potassium channels (KirBac1.1 and KcsA) in a molecular dynamics (MD) simulation study

Mikko Hellgren, Lars Sandberg, Olle Edholm

Journal:

Biophysical Chemistry

Year:

2006

Language:

english

File:

PDF, 379 KB

english, 2006

35

Determination of the Gaussian (Saddle-Splay) Modulus for Lipid Bilayers from Atomistic and Coarse Grained Simulations

Edholm, Olle, Brandt, Erik G.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 36 KB

english, 2011

36

Solvent diffusion outside macromolecular surfaces

Lindahl, Erik, Edholm, Olle

Journal:

Physical Review E

Year:

1998

Language:

english

File:

PDF, 177 KB

english, 1998

37

Hydrocarbon chain dynamics in lipid bilayers

Journal:

Chemistry and Physics of Lipids

Year:

1981

Language:

english

File:

PDF, 550 KB

english, 1981

38

Simulation of the Spontaneous Aggregation of Phospholipids into Bilayers

Marrink, Siewert J., Lindahl, Erik, Edholm, Olle, Mark, Alan E.

Journal:

Journal of the American Chemical Society

Year:

2001

Language:

english

File:

PDF, 388 KB

english, 2001

39

Conformation and aggregation of M13 coat protein studied by molecular dynamics

Johan C. Sanders, Nico A.J. van Nuland, Olle Edholm, Marcus A. Hemminga

Journal:

Biophysical Chemistry

Year:

1991

Language:

english

File:

PDF, 715 KB

english, 1991

40

Undulation Contributions to the Area Compressibility in Lipid Bilayer Simulations

Waheed, Qaiser, Edholm, Olle

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 409 KB

english, 2009

41

Molecular dynamics simulations of Zn[sup 2+] coordination in protein binding sites

Tjörnhammar, Richard, Edholm, Olle

Journal:

The Journal of Chemical Physics

Year:

2010

Language:

english

File:

PDF, 561 KB

english, 2010

42

Response to “a fast and simple method to calculate protonation states in proteins”

Lars Sandberg, Olle Edholm

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2000

Language:

english

File:

PDF, 37 KB

english, 2000

43

Molecular Dynamics Simulations of Phospholipid Bilayers with Cholesterol

Hofsäß, Christofer, Lindahl, Erik, Edholm, Olle

Journal:

Biophysical Journal

Year:

2003

Language:

english

File:

PDF, 678 KB

english, 2003

44

Dynamics in atomistic simulations of phospholipid membranes: Nuclear magnetic resonance relaxation rates and lateral diffusion

Wohlert, Jakob, Edholm, Olle

Journal:

The Journal of Chemical Physics

Year:

2006

Language:

english

File:

PDF, 942 KB

english, 2006

45

Nonlinear response effects in continuum models of the hydration of ions

Sandberg, Lars, Edholm, Olle

Journal:

The Journal of Chemical Physics

Year:

2002

Language:

english

File:

PDF, 429 KB

english, 2002

46

Stretched exponential dynamics in lipid bilayer simulations

Brandt, Erik G., Edholm, Olle

Journal:

The Journal of Chemical Physics

Year:

2010

Language:

english

File:

PDF, 1.11 MB

english, 2010

47

Molecular Dynamics Simulations of In-Plane Density Fluctuations in Phospholipid Bilayers

Brandt, Erik G., Edholm, Olle

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 36 KB

english, 2010

48

Theoretical studies of Rhizomucor miehei lipase activation

Norin, Matin, Olsen, Ole, Svendsen, Allan, Edholm, Olle, Hult, Karl

Journal:

Protein Engineering Design and Selection

Year:

1993

Language:

english

File:

PDF, 2.89 MB

english, 1993

49

The Shape and Free Energy of a Lipid Bilayer Surrounding a Membrane Inclusion

Tjörnhammar, Richard O., Edholm, Olle

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 40 KB

english, 2013

50

Reparameterized United Atom Model for Molecular Dynamics Simulations of Gel and Fluid Phosphatidylcholine Bilayers

Tjörnhammar, Richard, Edholm, Olle

Journal:

Journal of Chemical Theory and Computation

Year:

2014

Language:

english

File:

PDF, 3.94 MB

english, 2014

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